Software

FastProject

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FastProject uses gene sets to analyze low-dimensional projections of single-cell RNAseq expression data. Learn More

 

ImpulseDE2 and ImpulseDE

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ImpulseDE2 and ImpulseDE use a single-impulse functional model to identify genes that are differentially expressed in a single time course (across time) or between two time courses. Find out more

 

SCONE

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SCONE (Single-Cell Overview of Normalized Expression): An R Package for QC and Normalization of single cell RNA-Seq Data. Read more

 

scRAD

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scRAD (Single-Cell Reproducibility Across Donors) supports a reproducibility-driven framework for assessing expression differences in single-cell RNA-Seq (scRNA-Seq) data collected from multiple donors. Read more here

 

TRAPeS

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TRAPeS (TCR Reconstruction Algorithm for Paired-End Single-cell): a Python/ C++ package for efficiently extracting T cell receptor sequences from standard, short-read single cell RNA-seq libraries. Download it here.

 

scVI

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single-cell Variational Inference uses a deep generative model to analyze single-cell RNA sequencing datasets Learn More