FastProject uses gene sets to analyze low-dimensional projections of single-cell RNAseq expression data. Learn More
ImpulseDE2 and ImpulseDE
ImpulseDE2 and ImpulseDE use a single-impulse functional model to identify genes that are differentially expressed in a single time course (across time) or between two time courses. Find out more
SCONE (Single-Cell Overview of Normalized Expression): An R Package for QC and Normalization of single cell RNA-Seq Data. Read more
TRAPeS (TCR Reconstruction Algorithm for Paired-End Single-cell): a Python/ C++ package for efficiently extracting T cell receptor sequences from standard, short-read single cell RNA-seq libraries. Download it here.