Teaching

Spring 2015, 2016: Special topics course in computational molecular biology (CS294-108, CMPBIO290)

A graduate seminar class that covers recent computational methods for modeling various mechanisms related to the regulation of gene expression, primarily based on high throughput sequencing data.

Time& place: 177 Stanley; Tues & Thurs from 5:00-6:30pm

 

Fall 2014, 2015: Algorithms in computational Biology (CS176 )

Algorithms and probabilistic models that arise in various computational biology applications: suffix trees, suffix arrays, pattern matching, sequence alignment, network alignment, phylogenetics, Markov processes, hidden Markov models, and chromatin annotation.